In a mixing bowl, combine whole wheat flour, yeast, and salt. Add warm water and olive oil. Mix and knead for 5–8 minutes until a soft dough forms.
Cover the dough and let it rise in a warm place for 45–60 minutes, or until it doubles in size.
Preheat your oven to 450°F (230°C). Place a baking sheet or pizza stone inside to heat up.
While the oven heats, wash and slice all vegetables. If using zucchini or mushrooms, sauté them lightly to release moisture.
Roll out the dough on a lightly floured surface to your desired thickness. Transfer it to parchment paper.
Spread tomato sauce over the dough, then sprinkle with shredded cheese. Add all the sliced vegetables on top.
Carefully transfer the pizza to the hot baking surface and bake for 12–15 minutes or until the crust is golden and the cheese is melted.
Remove from the oven, garnish with fresh basil, slice, and serve.